miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86103968|gb|BB915177.1|BB915177 TTGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCC
TCTTCTCCTTTCATCACTCCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATT
GTTGAGGGAGAAGGCCGACTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAG
CTCAAGCTGCAACACCATCATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCAC
TTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTT
TGCATGCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTG
CTAACTTGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGAGCTGCTATTGAGTATGCAGTTCTGCATCTCAAG
GTTTCCAACATTGTGGTCA




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  324 bits (831), Expect = 2e-88
 Identities = 166/192 (86%), Positives = 173/192 (90%)
 Frame = +3

Query: 3   ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITPILREEMGKGYEEAIQELEKLLREKADL 182
           ASLN        TFPSLIQDKPVFASSSP ITP+LREEMGKGY+EAI+EL+KLLREK +L
Sbjct: 32  ASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPVLREEMGKGYDEAIEELQKLLREKTEL 91

Query: 183 KATAAEKVEQITAQLGSVTAQAATPSSSDGIPTSEASERIKTGFIHFKKEKYDKNPALYG 362
           KATAAEKVEQITAQLG       T SSSDGIP SEASERIKTGF+HFKKEKYDKNPALYG
Sbjct: 92  KATAAEKVEQITAQLG-------TTSSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYG 144

Query: 363 ELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEY 542
           ELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEY
Sbjct: 145 ELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEY 204

Query: 543 AVLHLKVSNIVV 578
           AVLHLKVSNIVV
Sbjct: 205 AVLHLKVSNIVV 216